Supplementary Table A (see text of paper for more details) 
=====================  

Parts (a), (b) and (c) for this table are for thresholds P_bias <=1.0e-13, 
 <=1.0e-09 and <=1.0e-05. There are three sets of rankings in each part. 

The first set of rankings is for the total number of bias residues in detected 
bias regions that have P_bias <=1.0e-13. The second set is simply a count 
of the total number of bias regions detected. The third set is a weighted 
count of the bias residues, where the total number of bias residues for each 
residue type is multiplied by (1/f) / S, where f is the frequency of an amino 
acid in the proteome, and S is the sum of all (1/f) for all twenty residues. 



(a) Table for P_bias <=1.0e-05 
------------------------------ 

residue		# of bias      residue		# of bias	residue		# of bias   
		residues			regions				residues 
										(weighted) 

S		37006		S		790		S		729.0
E		21163		E		634		E		579.9
L		18064		K		501		G		462.5
K		17067		A		465		N		456.7
N		15577		N		457		A		452.8
A		13974		D		435		C		445.7
G		12927		G		413		K		417.1
D		10004		Q		388		P		405.5
P		9892		P		386		Q		396.6
T		9866		F		320		F		351.8
F		8934		C		309		W		341.1
Q		8689		R		255		L		335.3
I		6939		L		248		D		307.8
R		5333		T		242		T		299.1
V		4121		H		168		H		225.8
C		3293		W		156		R		212.9
Y		2960		I		145		I		188.7
H		2645		Y		129		Y		157.2
W		2009		V		122		V		130.9
M		850		M		58		M		72.6
	



(b) Table for P_bias <=1.0e-09 
------------------------------ 

residue		# of bias      residue		# of bias	residue		# of bias   
		residues			regions				residues 
										(weighted) 

S		18502		S		240		S		365.2
E		9147		Q		167		E		250.4
T		6836		E		167		Q		237.9
N		6462		N		138		T		207.3
Q		5212		P		97		N		189.5
K		4280		D		93		P		157.3
P		3831		T		86		C		109.6
L		3512		K		73		K		104.6
D		3176		A		61		D		97.7
A		2473		G		52		A		80.1
G		2115		C		40		G		75.7
C		810		H		33		L		65.2
F		764		L		21		H		54.8
H		662		F		21		F		30.1
R		509		R		19		M		20.9
I		264		M		10		R		20.3
Y		262		Y		9		Y		13.9
M		245		V		5		I		7.2
V		150		I		2		V		4.8
										



(c) Table for P_bias <=1.0e-13
------------------------------ 

residue		# of bias      residue		# of bias	residue		# of bias   
		residues			regions				residues 
										(weighted) 

S		10630		S		108		S		209.8
T		5900		Q		104		Q		179.1
E		4704		N		73		T		178.9
Q		3924		E		68		E		128.8
N		3745		T		58		N		109.8
P		2049		P		37		P		84.1
K		1910		D		35		K		46.7
D		1292		K		24		D		39.8
G		961		G		20		C		34.6
A		916		A		19		G		34.4
L		554		H		8		A		29.7
C		256		C		8		H		16.1
R		204		R		6		M		13.9
H		195		M		5		L		10.3
M		163		L		5		R		8.1
F		94		V		3		F		3.7
V		90		Y		2		V		2.9
Y		33		F		2		Y		1.8
W		0		W		0		W		0.0
I		0		I		0		I		0.0